rsatoolbox reference

• rsatoolbox.data package
  • Submodules
    • rsatoolbox.data.base module
      • DatasetBase
    • rsatoolbox.data.computations module
      • average_dataset()
      • average_dataset_by()
    • rsatoolbox.data.dataset module
      • Dataset
      • TemporalDataset
      • dataset_from_dict()
      • load_dataset()
      • merge_subsets()
    • rsatoolbox.data.noise module
      • cov_from_measurements()
      • cov_from_residuals()
      • cov_from_unbalanced()
      • prec_from_measurements()
      • prec_from_residuals()
      • prec_from_unbalanced()
    • rsatoolbox.data.ops module
      • merge_datasets()
  • Module contents
• rsatoolbox.inference package
  • Submodules
    • rsatoolbox.inference.boot_testset module
      • bootstrap_testset()
      • bootstrap_testset_pattern()
      • bootstrap_testset_rdm()
    • rsatoolbox.inference.bootstrap module
      • bootstrap_sample()
      • bootstrap_sample_pattern()
      • bootstrap_sample_rdm()
    • rsatoolbox.inference.crossvalsets module
      • sets_k_fold()
      • sets_k_fold_pattern()
      • sets_k_fold_rdm()
      • sets_leave_one_out_pattern()
      • sets_leave_one_out_rdm()
      • sets_of_k_pattern()
      • sets_of_k_rdm()
      • sets_random()
    • rsatoolbox.inference.evaluate module
      • bootstrap_crossval()
      • crossval()
      • eval_bootstrap()
      • eval_bootstrap_pattern()
      • eval_bootstrap_rdm()
      • eval_dual_bootstrap()
      • eval_dual_bootstrap_random()
      • eval_fixed()
    • rsatoolbox.inference.noise_ceiling module
      • boot_noise_ceiling()
      • cv_noise_ceiling()
    • rsatoolbox.inference.result module
      • Result
      • load_results()
      • result_from_dict()
  • Module contents
• rsatoolbox.io package
  • Submodules
    • rsatoolbox.io.bids module
      • BidsFile
      • BidsJsonFile
      • BidsLayout
      • BidsMriFile
      • BidsTableFile
    • rsatoolbox.io.fmriprep module
      • FmriprepRun
      • find_fmriprep_runs()
      • make_design_matrix()
    • rsatoolbox.io.hdf5 module
      • read_dict_hdf5()
      • write_dict_hdf5()
    • rsatoolbox.io.meadows module
      • extract_filename_segments()
      • is_petname()
      • load_rdms()
      • load_rdms_comps_json()
      • load_rdms_comps_mat()
    • rsatoolbox.io.mne module
      • dataset_from_epochs()
      • descriptors_from_bids_filename()
      • read_epochs()
    • rsatoolbox.io.optional module
      • OptionalImportMissingException
      • import_nibabel()
      • import_nitools()
    • rsatoolbox.io.pandas module
      • rdms_to_df()
    • rsatoolbox.io.pkl module
      • read_dict_pkl()
      • write_dict_pkl()
    • rsatoolbox.io.spm module
      • SpmGlm
  • Module contents
• rsatoolbox.model package
  • Submodules
    • rsatoolbox.model.fitter module
      • Fitter
      • fit_interpolate()
      • fit_mock()
      • fit_optimize()
      • fit_optimize_positive()
      • fit_regress()
      • fit_regress_nn()
      • fit_select()
    • rsatoolbox.model.model module
      • Model
      • ModelFixed
      • ModelInterpolate
      • ModelSelect
      • ModelWeighted
      • model_from_dict()
  • Module contents
• rsatoolbox.rdm package
  • Submodules
    • rsatoolbox.rdm.calc module
      • calc_rdm()
      • calc_rdm_correlation()
      • calc_rdm_crossnobis()
      • calc_rdm_euclidean()
      • calc_rdm_mahalanobis()
      • calc_rdm_movie()
      • calc_rdm_poisson()
      • calc_rdm_poisson_cv()
    • rsatoolbox.rdm.calc_unbalanced module
      • calc_one_similarity()
      • calc_rdm_unbalanced()
      • ensure_double()
    • rsatoolbox.rdm.combine module
      • from_partials()
      • rescale()
    • rsatoolbox.rdm.compare module
      • compare()
      • compare_bures_metric()
      • compare_bures_similarity()
      • compare_correlation()
      • compare_correlation_cov_weighted()
      • compare_cosine()
      • compare_cosine_cov_weighted()
      • compare_kendall_tau()
      • compare_kendall_tau_a()
      • compare_neg_riemannian_distance()
      • compare_rho_a()
      • compare_spearman()
    • rsatoolbox.rdm.rdms module
      • RDMs
      • concat()
      • get_categorical_rdm()
      • inverse_permute_rdms()
      • load_rdm()
      • permute_rdms()
      • rdms_from_dict()
    • rsatoolbox.rdm.transform module
      • geodesic_transform()
      • geotopological_transform()
      • minmax_transform()
      • positive_transform()
      • rank_transform()
      • sqrt_transform()
      • transform()
    • rsatoolbox.rdm.pairs module
      • pairs_by_percentile()
  • Module contents
• rsatoolbox.simulation package
  • Submodules
    • rsatoolbox.simulation.sim module
      • make_dataset()
      • make_design()
      • make_signal()
  • Module contents
• rsatoolbox.util package
  • Submodules
    • rsatoolbox.util.data_utils module
      • extract_dict()
      • get_unique_inverse()
      • get_unique_unsorted()
    • rsatoolbox.util.descriptor_utils module
      • append_descriptor()
      • bool_index()
      • check_descriptor_length()
      • check_descriptor_length_error()
      • desc_eq()
      • dict_to_list()
      • format_descriptor()
      • num_index()
      • parse_input_descriptor()
      • subset_descriptor()
    • rsatoolbox.util.file_io module
      • remove_file()
    • rsatoolbox.util.inference_util module
      • all_tests()
      • bootstrap_pair_tests()
      • default_k_pattern()
      • default_k_rdm()
      • extract_variances()
      • get_errorbars()
      • input_check_model()
      • nc_tests()
      • pair_tests()
      • pool_rdm()
      • ranksum_pair_test()
      • ranksum_value_test()
      • t_test_0()
      • t_test_nc()
      • t_tests()
      • zero_tests()
    • rsatoolbox.util.matrix module
      • centering()
      • get_v()
      • indicator()
      • pairwise_contrast()
      • pairwise_contrast_sparse()
      • row_col_indicator_g()
      • row_col_indicator_rdm()
      • run()
      • square_between_category_binary_mask()
      • square_category_binary_mask()
    • rsatoolbox.util.pooling module
      • pool_rdm()
    • rsatoolbox.util.rdm_utils module
      • add_pattern_index()
      • batch_to_matrices()
      • batch_to_vectors()
      • category_condition_idxs()
    • rsatoolbox.util.searchlight module
      • evaluate_models_searchlight()
      • get_searchlight_RDMs()
      • get_volume_searchlight()
    • rsatoolbox.util.vis_utils module
      • Weighted_MDS
      • smacof()
      • weight_to_matrices()
  • Module contents
• rsatoolbox.vis package
  • Submodules
    • rsatoolbox.vis.colors module
      • color_scale()
      • rdm_colormap_classic()
    • rsatoolbox.vis.icon module
      • Icon
      • icons_from_folder()
    • rsatoolbox.vis.model_plot module
      • draw_hor_arrow()
      • plot_arrows()
      • plot_cliques()
      • plot_golan_wings()
      • plot_model_comparison()
      • plot_nili_bars()
    • rsatoolbox.vis.rdm_plot module
      • Axis
      • MultiRdmPlot
      • SingleRdmPlot
      • Symmetry
      • show_rdm()
      • show_rdm_panel()
    • rsatoolbox.vis.scatter_plot module
      • show_2d()
      • show_MDS()
      • show_iso()
      • show_scatter()
      • show_tSNE()
    • rsatoolbox.vis.timecourse module
      • plot_timecourse()
      • unsquareform()
  • Module contents