Index

A

abs_path() (rsatoolbox.io.bids.BidsLayout method) add_pattern_index() (in module rsatoolbox.util.rdm_utils) addContour() (rsatoolbox.vis.rdm_plot.MultiRdmPlot method) addOverlay() (rsatoolbox.vis.rdm_plot.MultiRdmPlot method) all_tests() (in module rsatoolbox.util.inference_util) append() (rsatoolbox.rdm.rdms.RDMs method)

append_descriptor() (in module rsatoolbox.util.descriptor_utils) average_dataset() (in module rsatoolbox.data.computations) average_dataset_by() (in module rsatoolbox.data.computations) ax (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) Axis (class in rsatoolbox.vis.rdm_plot)

B

batch_to_matrices() (in module rsatoolbox.util.rdm_utils) batch_to_vectors() (in module rsatoolbox.util.rdm_utils) BidsFile (class in rsatoolbox.io.bids) BidsJsonFile (class in rsatoolbox.io.bids) BidsLayout (class in rsatoolbox.io.bids) BidsMriFile (class in rsatoolbox.io.bids) BidsTableFile (class in rsatoolbox.io.bids) bin_time() (rsatoolbox.data.dataset.TemporalDataset method) boldFile (rsatoolbox.io.fmriprep.FmriprepRun attribute) bool_index() (in module rsatoolbox.util.descriptor_utils) boot_noise_ceiling() (in module rsatoolbox.inference.noise_ceiling)

bootstrap_crossval() (in module rsatoolbox.inference.evaluate) bootstrap_pair_tests() (in module rsatoolbox.util.inference_util) bootstrap_sample() (in module rsatoolbox.inference.bootstrap) bootstrap_sample_pattern() (in module rsatoolbox.inference.bootstrap) bootstrap_sample_rdm() (in module rsatoolbox.inference.bootstrap) bootstrap_testset() (in module rsatoolbox.inference.boot_testset) bootstrap_testset_pattern() (in module rsatoolbox.inference.boot_testset) bootstrap_testset_rdm() (in module rsatoolbox.inference.boot_testset) border_type (rsatoolbox.vis.icon.Icon property) border_width (rsatoolbox.vis.icon.Icon property) BOTH (rsatoolbox.vis.rdm_plot.Symmetry attribute)

C

calc_figsize() (rsatoolbox.vis.rdm_plot.MultiRdmPlot class method) calc_one_similarity() (in module rsatoolbox.rdm.calc_unbalanced) calc_rdm() (in module rsatoolbox.rdm.calc) calc_rdm_correlation() (in module rsatoolbox.rdm.calc) calc_rdm_crossnobis() (in module rsatoolbox.rdm.calc) calc_rdm_euclidean() (in module rsatoolbox.rdm.calc) calc_rdm_mahalanobis() (in module rsatoolbox.rdm.calc) calc_rdm_movie() (in module rsatoolbox.rdm.calc) calc_rdm_poisson() (in module rsatoolbox.rdm.calc) calc_rdm_poisson_cv() (in module rsatoolbox.rdm.calc) calc_rdm_unbalanced() (in module rsatoolbox.rdm.calc_unbalanced) category_condition_idxs() (in module rsatoolbox.util.rdm_utils) centering() (in module rsatoolbox.util.matrix) check_descriptor_length() (in module rsatoolbox.util.descriptor_utils) check_descriptor_length_error() (in module rsatoolbox.util.descriptor_utils) circ_cut (rsatoolbox.vis.icon.Icon property) cmap (rsatoolbox.vis.icon.Icon property) (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) color (rsatoolbox.vis.icon.Icon property) color_scale() (in module rsatoolbox.vis.colors) compare() (in module rsatoolbox.rdm.compare) compare_bures_metric() (in module rsatoolbox.rdm.compare) compare_bures_similarity() (in module rsatoolbox.rdm.compare) compare_correlation() (in module rsatoolbox.rdm.compare) compare_correlation_cov_weighted() (in module rsatoolbox.rdm.compare)

compare_cosine() (in module rsatoolbox.rdm.compare) compare_cosine_cov_weighted() (in module rsatoolbox.rdm.compare) compare_kendall_tau() (in module rsatoolbox.rdm.compare) compare_kendall_tau_a() (in module rsatoolbox.rdm.compare) compare_neg_riemannian_distance() (in module rsatoolbox.rdm.compare) compare_rho_a() (in module rsatoolbox.rdm.compare) compare_spearman() (in module rsatoolbox.rdm.compare) concat() (in module rsatoolbox.rdm.rdms) contour (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) contour_color (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) contour_mask (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) contour_symmetry (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) convert_to_dataset() (rsatoolbox.data.dataset.TemporalDataset method) copy() (rsatoolbox.data.base.DatasetBase method) (rsatoolbox.data.dataset.Dataset method) (rsatoolbox.data.dataset.TemporalDataset method) (rsatoolbox.rdm.rdms.RDMs method) cov_from_measurements() (in module rsatoolbox.data.noise) cov_from_residuals() (in module rsatoolbox.data.noise) cov_from_unbalanced() (in module rsatoolbox.data.noise) crossval() (in module rsatoolbox.inference.evaluate) cv_noise_ceiling() (in module rsatoolbox.inference.noise_ceiling)

D

Dataset (class in rsatoolbox.data.dataset) dataset_from_dict() (in module rsatoolbox.data.dataset) dataset_from_epochs() (in module rsatoolbox.io.mne) DatasetBase (class in rsatoolbox.data.base) default_k_pattern() (in module rsatoolbox.util.inference_util) default_k_rdm() (in module rsatoolbox.util.inference_util) derivative (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) desc (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute)

desc_eq() (in module rsatoolbox.util.descriptor_utils) descriptors (rsatoolbox.rdm.rdms.RDMs attribute) descriptors_from_bids_filename() (in module rsatoolbox.io.mne) determine_rows_cols_panels() (rsatoolbox.vis.rdm_plot.MultiRdmPlot class method) dict_to_list() (in module rsatoolbox.util.descriptor_utils) dissimilarities (rsatoolbox.rdm.rdms.RDMs attribute) dissimilarity_measure (rsatoolbox.rdm.rdms.RDMs attribute) (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) draw_hor_arrow() (in module rsatoolbox.vis.model_plot)

E

ensure_double() (in module rsatoolbox.rdm.calc_unbalanced) eval_bootstrap() (in module rsatoolbox.inference.evaluate) eval_bootstrap_pattern() (in module rsatoolbox.inference.evaluate) eval_bootstrap_rdm() (in module rsatoolbox.inference.evaluate) eval_dual_bootstrap() (in module rsatoolbox.inference.evaluate) eval_dual_bootstrap_random() (in module rsatoolbox.inference.evaluate) eval_fixed() (in module rsatoolbox.inference.evaluate)

evaluate_models_searchlight() (in module rsatoolbox.util.searchlight) ext (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) extract_dict() (in module rsatoolbox.util.data_utils) extract_filename_segments() (in module rsatoolbox.io.meadows) extract_variances() (in module rsatoolbox.util.inference_util)

F

fig (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) figsize (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) find_events_for() (rsatoolbox.io.bids.BidsLayout method) find_fmriprep_runs() (in module rsatoolbox.io.fmriprep) find_meta_for() (rsatoolbox.io.bids.BidsLayout method) find_mri_derivative_files() (rsatoolbox.io.bids.BidsLayout method) find_mri_sibling_of() (rsatoolbox.io.bids.BidsLayout method) find_table_key_for() (rsatoolbox.io.bids.BidsLayout method) find_table_sibling_of() (rsatoolbox.io.bids.BidsLayout method) fit() (rsatoolbox.model.model.Model method) (rsatoolbox.util.vis_utils.Weighted_MDS method) fit_interpolate() (in module rsatoolbox.model.fitter) fit_mock() (in module rsatoolbox.model.fitter)

fit_optimize() (in module rsatoolbox.model.fitter) fit_optimize_positive() (in module rsatoolbox.model.fitter) fit_regress() (in module rsatoolbox.model.fitter) fit_regress_nn() (in module rsatoolbox.model.fitter) fit_select() (in module rsatoolbox.model.fitter) fit_transform() (rsatoolbox.util.vis_utils.Weighted_MDS method) Fitter (class in rsatoolbox.model.fitter) FmriprepRun (class in rsatoolbox.io.fmriprep) for_single() (rsatoolbox.vis.rdm_plot.MultiRdmPlot method) format_descriptor() (in module rsatoolbox.util.descriptor_utils) fpath (rsatoolbox.io.bids.BidsFile property) from_df() (rsatoolbox.data.dataset.Dataset static method) from_partials() (in module rsatoolbox.rdm.combine) from_show_rdm_args() (rsatoolbox.vis.rdm_plot.MultiRdmPlot class method) from_show_rdm_panel_args() (rsatoolbox.vis.rdm_plot.SingleRdmPlot class method)

G

geodesic_transform() (in module rsatoolbox.rdm.transform) geotopological_transform() (in module rsatoolbox.rdm.transform) get_betas() (rsatoolbox.io.spm.SpmGlm method) get_categorical_rdm() (in module rsatoolbox.rdm.rdms) get_channel_descriptors() (rsatoolbox.io.fmriprep.FmriprepRun method) get_ci() (rsatoolbox.inference.result.Result method) get_confounds() (rsatoolbox.io.fmriprep.FmriprepRun method) get_data() (rsatoolbox.io.bids.BidsJsonFile method) (rsatoolbox.io.bids.BidsMriFile method) (rsatoolbox.io.fmriprep.FmriprepRun method) get_dataset_descriptors() (rsatoolbox.io.fmriprep.FmriprepRun method) get_errorbars() (in module rsatoolbox.util.inference_util) (rsatoolbox.inference.result.Result method) get_events() (rsatoolbox.io.bids.BidsMriFile method) (rsatoolbox.io.fmriprep.FmriprepRun method) get_frame() (rsatoolbox.io.bids.BidsTableFile method) get_info_from_spm_mat() (rsatoolbox.io.spm.SpmGlm method) get_key() (rsatoolbox.io.bids.BidsMriFile method) get_mask() (rsatoolbox.io.fmriprep.FmriprepRun method) get_matrices() (rsatoolbox.rdm.rdms.RDMs method) get_means() (rsatoolbox.inference.result.Result method)

get_measurements() (rsatoolbox.data.dataset.Dataset method) get_measurements_tensor() (rsatoolbox.data.dataset.Dataset method) get_meta() (rsatoolbox.io.bids.BidsFile method) (rsatoolbox.io.fmriprep.FmriprepRun method) get_model_var() (rsatoolbox.inference.result.Result method) get_mri_sibling() (rsatoolbox.io.bids.BidsMriFile method) get_noise_ceil() (rsatoolbox.inference.result.Result method) get_obs_descriptors() (rsatoolbox.io.fmriprep.FmriprepRun method) get_parcellation() (rsatoolbox.io.fmriprep.FmriprepRun method) get_parcellation_labels() (rsatoolbox.io.fmriprep.FmriprepRun method) get_residuals() (rsatoolbox.io.spm.SpmGlm method) get_searchlight_RDMs() (in module rsatoolbox.util.searchlight) get_sem() (rsatoolbox.inference.result.Result method) get_table_sibling() (rsatoolbox.io.bids.BidsFile method) get_unique_inverse() (in module rsatoolbox.util.data_utils) get_unique_unsorted() (in module rsatoolbox.util.data_utils) get_v() (in module rsatoolbox.util.matrix) get_vectors() (rsatoolbox.rdm.rdms.RDMs method) get_volume_searchlight() (in module rsatoolbox.util.searchlight) gridlines (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute)

H

handles (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute)

I

Icon (class in rsatoolbox.vis.icon) icon_spacing (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) icons_from_folder() (in module rsatoolbox.vis.icon) image (rsatoolbox.vis.icon.Icon property) import_nibabel() (in module rsatoolbox.io.optional) import_nitools() (in module rsatoolbox.io.optional)

indicator() (in module rsatoolbox.util.matrix) init_nan_mask() (rsatoolbox.vis.rdm_plot.MultiRdmPlot class method) input_check_model() (in module rsatoolbox.util.inference_util) interpret_rdm_arg() (rsatoolbox.vis.rdm_plot.MultiRdmPlot method) (rsatoolbox.vis.rdm_plot.SingleRdmPlot method) inverse_permute_rdms() (in module rsatoolbox.rdm.rdms) is_petname() (in module rsatoolbox.io.meadows)

L

linewidth (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) load_dataset() (in module rsatoolbox.data.dataset) load_rdm() (in module rsatoolbox.rdm.rdms) load_rdms() (in module rsatoolbox.io.meadows)

load_rdms_comps_json() (in module rsatoolbox.io.meadows) load_rdms_comps_mat() (in module rsatoolbox.io.meadows) load_results() (in module rsatoolbox.inference.result) LOWER (rsatoolbox.vis.rdm_plot.Symmetry attribute)

M

make_dataset() (in module rsatoolbox.simulation.sim) make_design() (in module rsatoolbox.simulation.sim) make_design_matrix() (in module rsatoolbox.io.fmriprep) make_signal() (in module rsatoolbox.simulation.sim) make_square (rsatoolbox.vis.icon.Icon property) mean() (rsatoolbox.rdm.rdms.RDMs method) merge_datasets() (in module rsatoolbox.data.ops) merge_subsets() (in module rsatoolbox.data.dataset) minmax_transform() (in module rsatoolbox.rdm.transform) modality (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) Model (class in rsatoolbox.model.model) model_from_dict() (in module rsatoolbox.model.model) ModelFixed (class in rsatoolbox.model.model) ModelInterpolate (class in rsatoolbox.model.model) ModelSelect (class in rsatoolbox.model.model) ModelWeighted (class in rsatoolbox.model.model) module rsatoolbox.data rsatoolbox.data.base rsatoolbox.data.computations rsatoolbox.data.dataset rsatoolbox.data.noise rsatoolbox.data.ops rsatoolbox.inference rsatoolbox.inference.boot_testset rsatoolbox.inference.bootstrap rsatoolbox.inference.crossvalsets rsatoolbox.inference.evaluate rsatoolbox.inference.noise_ceiling rsatoolbox.inference.result rsatoolbox.io rsatoolbox.io.bids rsatoolbox.io.fmriprep rsatoolbox.io.hdf5 rsatoolbox.io.meadows rsatoolbox.io.mne rsatoolbox.io.optional rsatoolbox.io.pandas rsatoolbox.io.pkl rsatoolbox.io.spm rsatoolbox.model rsatoolbox.model.fitter rsatoolbox.model.model rsatoolbox.rdm rsatoolbox.rdm.calc rsatoolbox.rdm.calc_unbalanced rsatoolbox.rdm.combine rsatoolbox.rdm.compare rsatoolbox.rdm.pairs rsatoolbox.rdm.rdms rsatoolbox.rdm.transform rsatoolbox.simulation rsatoolbox.simulation.sim rsatoolbox.util rsatoolbox.util.data_utils rsatoolbox.util.descriptor_utils rsatoolbox.util.file_io rsatoolbox.util.inference_util rsatoolbox.util.matrix rsatoolbox.util.pooling rsatoolbox.util.rdm_utils rsatoolbox.util.searchlight rsatoolbox.util.vis_utils rsatoolbox.vis rsatoolbox.vis.colors rsatoolbox.vis.icon rsatoolbox.vis.model_plot rsatoolbox.vis.rdm_plot rsatoolbox.vis.scatter_plot rsatoolbox.vis.timecourse

MultiRdmPlot (class in rsatoolbox.vis.rdm_plot)

N

n_column (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) n_panel (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) n_row (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) nanmask (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute)

nc_tests() (in module rsatoolbox.util.inference_util) nested_odd_even_split() (rsatoolbox.data.dataset.Dataset method) num_index() (in module rsatoolbox.util.descriptor_utils) num_pattern_groups (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute)

O

odd_even_split() (rsatoolbox.data.dataset.Dataset method) OptionalImportMissingException overlay (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) overlay_color (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute)

overlay_mask (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) overlay_symmetry (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute)

P

pair_tests() (in module rsatoolbox.util.inference_util) pairs_by_percentile() (in module rsatoolbox.rdm.pairs) pairwise_contrast() (in module rsatoolbox.util.matrix) pairwise_contrast_sparse() (in module rsatoolbox.util.matrix) parse_input_descriptor() (in module rsatoolbox.util.descriptor_utils) pattern_descriptor (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) pattern_descriptors (rsatoolbox.rdm.rdms.RDMs attribute) permute_rdms() (in module rsatoolbox.rdm.rdms) plot() (rsatoolbox.vis.icon.Icon method) (rsatoolbox.vis.rdm_plot.MultiRdmPlot method) plot_arrows() (in module rsatoolbox.vis.model_plot) plot_cliques() (in module rsatoolbox.vis.model_plot) plot_golan_wings() (in module rsatoolbox.vis.model_plot) plot_model_comparison() (in module rsatoolbox.vis.model_plot) plot_nili_bars() (in module rsatoolbox.vis.model_plot) plot_timecourse() (in module rsatoolbox.vis.timecourse)

pool_rdm() (in module rsatoolbox.util.inference_util) (in module rsatoolbox.util.pooling) positive_transform() (in module rsatoolbox.rdm.transform) prec_from_measurements() (in module rsatoolbox.data.noise) prec_from_residuals() (in module rsatoolbox.data.noise) prec_from_unbalanced() (in module rsatoolbox.data.noise) predict() (rsatoolbox.model.model.Model method) (rsatoolbox.model.model.ModelFixed method) (rsatoolbox.model.model.ModelInterpolate method) (rsatoolbox.model.model.ModelSelect method) (rsatoolbox.model.model.ModelWeighted method) predict_rdm() (rsatoolbox.model.model.Model method) (rsatoolbox.model.model.ModelFixed method) (rsatoolbox.model.model.ModelInterpolate method) (rsatoolbox.model.model.ModelSelect method) (rsatoolbox.model.model.ModelWeighted method)

R

rank_transform() (in module rsatoolbox.rdm.transform) ranksum_pair_test() (in module rsatoolbox.util.inference_util) ranksum_value_test() (in module rsatoolbox.util.inference_util) rdm_colormap_classic() (in module rsatoolbox.vis.colors) rdm_descriptor (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) rdm_descriptors (rsatoolbox.rdm.rdms.RDMs attribute) RDMs (class in rsatoolbox.rdm.rdms) rdms (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) rdms_from_dict() (in module rsatoolbox.rdm.rdms) rdms_to_df() (in module rsatoolbox.io.pandas) read_dict_hdf5() (in module rsatoolbox.io.hdf5) read_dict_pkl() (in module rsatoolbox.io.pkl) read_epochs() (in module rsatoolbox.io.mne) recompute_final_image() (rsatoolbox.vis.icon.Icon method) relocate_file() (rsatoolbox.io.spm.SpmGlm method) remove_file() (in module rsatoolbox.util.file_io) reorder() (rsatoolbox.rdm.rdms.RDMs method) rescale() (in module rsatoolbox.rdm.combine) resolution (rsatoolbox.vis.icon.Icon property) Result (class in rsatoolbox.inference.result) result_from_dict() (in module rsatoolbox.inference.result) row_col_indicator_g() (in module rsatoolbox.util.matrix) row_col_indicator_rdm() (in module rsatoolbox.util.matrix) rsatoolbox.data module rsatoolbox.data.base module rsatoolbox.data.computations module rsatoolbox.data.dataset module rsatoolbox.data.noise module rsatoolbox.data.ops module rsatoolbox.inference module rsatoolbox.inference.boot_testset module rsatoolbox.inference.bootstrap module rsatoolbox.inference.crossvalsets module rsatoolbox.inference.evaluate module rsatoolbox.inference.noise_ceiling module rsatoolbox.inference.result module rsatoolbox.io module rsatoolbox.io.bids module rsatoolbox.io.fmriprep module rsatoolbox.io.hdf5 module rsatoolbox.io.meadows module rsatoolbox.io.mne module rsatoolbox.io.optional module rsatoolbox.io.pandas module rsatoolbox.io.pkl module

rsatoolbox.io.spm module rsatoolbox.model module rsatoolbox.model.fitter module rsatoolbox.model.model module rsatoolbox.rdm module rsatoolbox.rdm.calc module rsatoolbox.rdm.calc_unbalanced module rsatoolbox.rdm.combine module rsatoolbox.rdm.compare module rsatoolbox.rdm.pairs module rsatoolbox.rdm.rdms module rsatoolbox.rdm.transform module rsatoolbox.simulation module rsatoolbox.simulation.sim module rsatoolbox.util module rsatoolbox.util.data_utils module rsatoolbox.util.descriptor_utils module rsatoolbox.util.file_io module rsatoolbox.util.inference_util module rsatoolbox.util.matrix module rsatoolbox.util.pooling module rsatoolbox.util.rdm_utils module rsatoolbox.util.searchlight module rsatoolbox.util.vis_utils module rsatoolbox.vis module rsatoolbox.vis.colors module rsatoolbox.vis.icon module rsatoolbox.vis.model_plot module rsatoolbox.vis.rdm_plot module rsatoolbox.vis.scatter_plot module rsatoolbox.vis.timecourse module run (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) (rsatoolbox.io.fmriprep.FmriprepRun property) run() (in module rsatoolbox.util.matrix)

S

save() (rsatoolbox.data.base.DatasetBase method) (rsatoolbox.inference.result.Result method) (rsatoolbox.rdm.rdms.RDMs method) ses (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) (rsatoolbox.io.fmriprep.FmriprepRun property) set_fit_request() (rsatoolbox.util.vis_utils.Weighted_MDS method) sets_k_fold() (in module rsatoolbox.inference.crossvalsets) sets_k_fold_pattern() (in module rsatoolbox.inference.crossvalsets) sets_k_fold_rdm() (in module rsatoolbox.inference.crossvalsets) sets_leave_one_out_pattern() (in module rsatoolbox.inference.crossvalsets) sets_leave_one_out_rdm() (in module rsatoolbox.inference.crossvalsets) sets_of_k_pattern() (in module rsatoolbox.inference.crossvalsets) sets_of_k_rdm() (in module rsatoolbox.inference.crossvalsets) sets_random() (in module rsatoolbox.inference.crossvalsets) show_2d() (in module rsatoolbox.vis.scatter_plot) show_colorbar (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) show_iso() (in module rsatoolbox.vis.scatter_plot) show_MDS() (in module rsatoolbox.vis.scatter_plot) show_rdm() (in module rsatoolbox.vis.rdm_plot) show_rdm_panel() (in module rsatoolbox.vis.rdm_plot) show_scatter() (in module rsatoolbox.vis.scatter_plot) show_tSNE() (in module rsatoolbox.vis.scatter_plot) SingleRdmPlot (class in rsatoolbox.vis.rdm_plot) smacof() (in module rsatoolbox.util.vis_utils) sort_by() (rsatoolbox.data.dataset.Dataset method) (rsatoolbox.data.dataset.TemporalDataset method) (rsatoolbox.rdm.rdms.RDMs method) space (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) split_channel() (rsatoolbox.data.base.DatasetBase method) (rsatoolbox.data.dataset.Dataset method) (rsatoolbox.data.dataset.TemporalDataset method)

split_obs() (rsatoolbox.data.base.DatasetBase method) (rsatoolbox.data.dataset.Dataset method) (rsatoolbox.data.dataset.TemporalDataset method) split_time() (rsatoolbox.data.dataset.TemporalDataset method) spm_filter() (rsatoolbox.io.spm.SpmGlm method) SpmGlm (class in rsatoolbox.io.spm) sqrt_transform() (in module rsatoolbox.rdm.transform) square_between_category_binary_mask() (in module rsatoolbox.util.matrix) square_category_binary_mask() (in module rsatoolbox.util.matrix) string (rsatoolbox.vis.icon.Icon property) style (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) sub (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) (rsatoolbox.io.fmriprep.FmriprepRun property) subsample() (rsatoolbox.rdm.rdms.RDMs method) subsample_pattern() (rsatoolbox.rdm.rdms.RDMs method) subset() (rsatoolbox.rdm.rdms.RDMs method) subset_channel() (rsatoolbox.data.base.DatasetBase method) (rsatoolbox.data.dataset.Dataset method) (rsatoolbox.data.dataset.TemporalDataset method) subset_descriptor() (in module rsatoolbox.util.descriptor_utils) subset_obs() (rsatoolbox.data.base.DatasetBase method) (rsatoolbox.data.dataset.Dataset method) (rsatoolbox.data.dataset.TemporalDataset method) subset_pattern() (rsatoolbox.rdm.rdms.RDMs method) subset_time() (rsatoolbox.data.dataset.TemporalDataset method) suffix (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) summary() (rsatoolbox.inference.result.Result method) Symmetry (class in rsatoolbox.vis.rdm_plot)

T

t_test_0() (in module rsatoolbox.util.inference_util) t_test_nc() (in module rsatoolbox.util.inference_util) t_tests() (in module rsatoolbox.util.inference_util) task (rsatoolbox.io.bids.BidsFile attribute) (rsatoolbox.io.bids.BidsMriFile attribute) (rsatoolbox.io.bids.BidsTableFile attribute) TemporalDataset (class in rsatoolbox.data.dataset) test_all() (rsatoolbox.inference.result.Result method) test_noise() (rsatoolbox.inference.result.Result method) test_pairwise() (rsatoolbox.inference.result.Result method) test_zero() (rsatoolbox.inference.result.Result method)

time_as_channels() (rsatoolbox.data.dataset.TemporalDataset method) time_as_observations() (rsatoolbox.data.dataset.TemporalDataset method) title (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute) to_descriptors() (rsatoolbox.io.fmriprep.FmriprepRun method) to_df() (rsatoolbox.data.dataset.Dataset method) (rsatoolbox.rdm.rdms.RDMs method) to_dict() (rsatoolbox.data.base.DatasetBase method) (rsatoolbox.data.dataset.TemporalDataset method) (rsatoolbox.inference.result.Result method) (rsatoolbox.model.model.Model method) (rsatoolbox.rdm.rdms.RDMs method) transform() (in module rsatoolbox.rdm.transform)

U

unsquareform() (in module rsatoolbox.vis.timecourse)

UPPER (rsatoolbox.vis.rdm_plot.Symmetry attribute)

V

vmax (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute)

vmin (rsatoolbox.vis.rdm_plot.MultiRdmPlot attribute) (rsatoolbox.vis.rdm_plot.SingleRdmPlot attribute)

W

weight_to_matrices() (in module rsatoolbox.util.vis_utils) Weighted_MDS (class in rsatoolbox.util.vis_utils)

write_dict_hdf5() (in module rsatoolbox.io.hdf5) write_dict_pkl() (in module rsatoolbox.io.pkl)

X

X (rsatoolbox.vis.rdm_plot.Axis attribute)

x_tick_label() (rsatoolbox.vis.icon.Icon method)

Y

Y (rsatoolbox.vis.rdm_plot.Axis attribute)

y_tick_label() (rsatoolbox.vis.icon.Icon method)

Z

zero_tests() (in module rsatoolbox.util.inference_util)